One or more samples in your database are in the GBS.

You can use the information in the GBS to determine if samples in your database are affected by various genomic events. This can be at specific coordinates, genes or gene lists. You can also determine whether any genomic events overlap for multiple samples.

Database selected

NA12878trio.hc.vqsr.decomposed.normalised.vep.db

Select a family to analyse

Family information

Not applicable.

Please ensure this information is correct before proceeding.

Select an analysis type


Description

This analysis type lets you find all variants that overlap with your genes of interest by one or more bases. For example, if a variant caller identifies a deletion at coordinates 1:20,000-30,000 and one of your genes of interest is at 1:29,000-45,000, this represents a 1,000bp overlap at 1:29,000-30,000.

Gene lists

Select one or more gene lists

Clear

Genomics England PanelApp Panels

Clear

Search custom gene list

Separate multiple genes with a semicolon, comma or space.


Further filters


1.5

Return deletion variants with a copy number equal to or below this value. To return all deletion variants, set this value to 2. All variants with no copy number will be returned.


2.5

Return amplified variants with a copy number equal to or above this value. To return all amplified variants, set this value to 2. All variants with no copy number will be returned.


0

Perform queries on blocks this size or larger. To search all block sizes, set this value to 0.



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